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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041358
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169d (MI0002254)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCGGGTTGTCCTTGGCTATA

mismatches: 3
bulges: 0

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pre-miRNA
GAGTCGAATGCAGCCAAGGATGACTTGCCGGCATTTCCTCCTAAGTAGCGAGCCCGGCAAGGCTTCTATTTGGCACGCCCGGCCGGCGGGTTGTCCTTGG
CTATA
TTTGGT


dot-bracket secondary structure
...(((((((.(((((((((..((((((((((........((((((((.(((((......)))))))))))))........))))))))))..)))))))
)).))
))))).



SIMILARITIES
miRBase ptc-MIR169g: 3e-23

PMRD ptc-miR169d: 2e-58

microPC miR169: 0.0000003
UniProt no hits

RFAM MIR169_2: 3e-57

Identical with: ptc-miR169d from PMRD (MNEST051661)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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